HL_5J5B_202

3D structure

PDB id

5J5B (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the WT E coli ribosome bound to tetracycline

Experimental method

X-RAY DIFFRACTION

Resolution

2.8 Å

Loop

Sequence

GAAGACGAC

Length

9 nucleotides

Bulged bases

5J5B|1|DA|A|2820

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5J5B_202 not in the Motif Atlas

Homologous match to HL_5J7L_201

Geometric discrepancy: 0.0379

The information below is about HL_5J7L_201

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_64690.6

Basepair signature

cWW-cSW-F-F-F-F

Number of instances in this motif group

9

Unit IDs

5J5B|1|DA|G|2819
5J5B|1|DA|A|2820
5J5B|1|DA|A|2821
5J5B|1|DA|G|2822
5J5B|1|DA|A|2823
5J5B|1|DA|C|2824
5J5B|1|DA|G|2825
5J5B|1|DA|A|2826
5J5B|1|DA|C|2827

Current chains

Chain DA

23S rRNA

Nearby chains

Chain D1

50S ribosomal protein L32

Chain DD

50S ribosomal protein L3

Chain DO

50S ribosomal protein L17