HL_5J5B_219

3D structure

PDB id

5J5B (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the WT E coli ribosome bound to tetracycline

Experimental method

X-RAY DIFFRACTION

Resolution

2.8 Å

Loop

Sequence

GUCGGACAU

Length

9 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5J5B_219 not in the Motif Atlas

Homologous match to HL_9DFE_198

Geometric discrepancy: 0.2339

The information below is about HL_9DFE_198

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_02452.1

Basepair signature

cWW-F-cWH-F-F-F-F

Number of instances in this motif group

8

Unit IDs

5J5B|1|CA|G|2304
5J5B|1|CA|U|2305
5J5B|1|CA|C|2306
5J5B|1|CA|G|2307
5J5B|1|CA|G|2308
5J5B|1|CA|A|2309
5J5B|1|CA|C|2310
5J5B|1|CA|A|2311
5J5B|1|CA|U|2312

Current chains

Chain CA

23S rRNA

Nearby chains

Chain CF

50S ribosomal protein L5