HL_5J5B_220

3D structure

PDB id

5J5B (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the WT E coli ribosome bound to tetracycline

Experimental method

X-RAY DIFFRACTION

Resolution

2.8 Å

Loop

Sequence

GCUUAUGC

Length

8 nucleotides

Bulged bases

5J5B|1|DA|U|1173, 5J5B|1|DA|U|1174, 5J5B|1|DA|A|1175, 5J5B|1|DA|U|1176

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5J5B_220 not in the Motif Atlas

Homologous match to HL_5J7L_163

Geometric discrepancy: 0.0552

The information below is about HL_5J7L_163

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_13963.3

Basepair signature

cWW-F-F

Number of instances in this motif group

4

Unit IDs

5J5B|1|DA|G|1171
5J5B|1|DA|C|1172
5J5B|1|DA|U|1173
5J5B|1|DA|U|1174
5J5B|1|DA|A|1175
5J5B|1|DA|U|1176
5J5B|1|DA|G|1177
5J5B|1|DA|C|1178

Current chains

Chain DA

23S rRNA

Nearby chains

Chain DM

50S ribosomal protein L15