HL_5J7L_042

3D structure

PDB id

5J7L (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the 70S E coli ribosome with the U1052G mutation in the 16S rRNA bound to tetracycline

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

CUUCGG

Length

6 nucleotides

Bulged bases

5J7L|1|BA|U|421

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5J7L_042 not in the Motif Atlas

Homologous match to HL_5J7L_011

Geometric discrepancy: 0.0116

The information below is about HL_5J7L_011

Detailed Annotation

UNCG

Broad Annotation

No text annotation

Motif group

HL_34617.5

Basepair signature

cWW-tSW-F

Number of instances in this motif group

57

Unit IDs

5J7L|1|BA|C|419
5J7L|1|BA|U|420
5J7L|1|BA|U|421
5J7L|1|BA|C|422
5J7L|1|BA|G|423
5J7L|1|BA|G|424

Current chains

Chain BA

16S rRNA

Nearby chains

Chain AK

30S ribosomal protein S11

Chain BC

30S ribosomal protein S3

Chain BD

30S ribosomal protein S4