HL_5J7L_063

3D structure

PDB id

5J7L (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the 70S E coli ribosome with the U1052G mutation in the 16S rRNA bound to tetracycline

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

UGCUAAUCUG

Length

10 nucleotides

Bulged bases

5J7L|1|CA|C|61

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5J7L_063 not in the Motif Atlas

Homologous match to HL_5J7L_134

Geometric discrepancy: 0.0582

The information below is about HL_5J7L_134

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_35677.3

Basepair signature

cWW-F-F-F-F-F-F-F

Number of instances in this motif group

7

Unit IDs

5J7L|1|CA|U|59
5J7L|1|CA|G|60
5J7L|1|CA|C|61
5J7L|1|CA|U|62
5J7L|1|CA|A|63
5J7L|1|CA|A|64
5J7L|1|CA|U|65
5J7L|1|CA|C|66
5J7L|1|CA|U|67
5J7L|1|CA|G|68

Current chains

Chain CA

23S rRNA

Nearby chains

Chain C3

50S ribosomal protein L34

Chain CU

50S ribosomal protein L23

Chain CZ

50S ribosomal protein L29