HL_5J7L_089

3D structure

PDB id

5J7L (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the 70S E coli ribosome with the U1052G mutation in the 16S rRNA bound to tetracycline

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

GAAACAAC

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5J7L_089 not in the Motif Atlas

Homologous match to HL_4WF9_028

Geometric discrepancy: 0.0865

The information below is about HL_4WF9_028

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_42998.2

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

7

Unit IDs

5J7L|1|CA|G|978
5J7L|1|CA|A|979
5J7L|1|CA|A|980
5J7L|1|CA|A|981
5J7L|1|CA|C|982
5J7L|1|CA|A|983
5J7L|1|CA|A|984
5J7L|1|CA|C|985

Current chains

Chain CA

23S rRNA

Nearby chains

Chain C0

50S ribosomal protein L30

Chain CR

50S ribosomal protein L20

Chain CS

50S ribosomal protein L21