HL_5J7L_090

3D structure

PDB id

5J7L (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the 70S E coli ribosome with the U1052G mutation in the 16S rRNA bound to tetracycline

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

CUUAGAAGCAG

Length

11 nucleotides

Bulged bases

5J7L|1|CA|A|1070

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5J7L_090 not in the Motif Atlas

Homologous match to HL_5J7L_161

Geometric discrepancy: 0.0312

The information below is about HL_5J7L_161

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_19210.3

Basepair signature

cWW-F-F-F-F-F-F-F-F

Number of instances in this motif group

7

Unit IDs

5J7L|1|CA|C|1064
5J7L|1|CA|U|1065
5J7L|1|CA|U|1066
5J7L|1|CA|A|1067
5J7L|1|CA|G|1068
5J7L|1|CA|A|1069
5J7L|1|CA|A|1070
5J7L|1|CA|G|1071
5J7L|1|CA|C|1072
5J7L|1|CA|A|1073
5J7L|1|CA|G|1074

Current chains

Chain CA

23S rRNA

Nearby chains

Chain CJ

50S ribosomal protein L11