HL_5J7L_097

3D structure

PDB id

5J7L (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the 70S E coli ribosome with the U1052G mutation in the 16S rRNA bound to tetracycline

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

GUUAAUAUUC

Length

10 nucleotides

Bulged bases

5J7L|1|CA|U|1396, 5J7L|1|CA|U|1397

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5J7L_097 not in the Motif Atlas

Homologous match to HL_5J7L_168

Geometric discrepancy: 0.0631

The information below is about HL_5J7L_168

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_81545.2

Basepair signature

cWW-tWH-F-F-F-F

Number of instances in this motif group

7

Unit IDs

5J7L|1|CA|G|1389
5J7L|1|CA|U|1390
5J7L|1|CA|U|1391
5J7L|1|CA|A|1392
5J7L|1|CA|A|1393
5J7L|1|CA|U|1394
5J7L|1|CA|A|1395
5J7L|1|CA|U|1396
5J7L|1|CA|U|1397
5J7L|1|CA|C|1398

Current chains

Chain CA

23S rRNA

Nearby chains

Chain CU

50S ribosomal protein L23