HL_5J7L_099

3D structure

PDB id

5J7L (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the 70S E coli ribosome with the U1052G mutation in the 16S rRNA bound to tetracycline

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

GCAAAUC

Length

7 nucleotides

Bulged bases

5J7L|1|CA|C|1493, 5J7L|1|CA|U|1497

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5J7L_099 not in the Motif Atlas

Homologous match to HL_5J7L_170

Geometric discrepancy: 0.0072

The information below is about HL_5J7L_170

Detailed Annotation

Pseudoknot geometry with 3' bulge

Broad Annotation

No text annotation

Motif group

HL_57176.2

Basepair signature

cWW-F-F-F

Number of instances in this motif group

14

Unit IDs

5J7L|1|CA|G|1492
5J7L|1|CA|C|1493
5J7L|1|CA|A|1494
5J7L|1|CA|A|1495
5J7L|1|CA|A|1496
5J7L|1|CA|U|1497
5J7L|1|CA|C|1498

Current chains

Chain CA

23S rRNA

Nearby chains

Chain CC

50S ribosomal protein L2