3D structure

PDB id
5J7L (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of the 70S E coli ribosome with the U1052G mutation in the 16S rRNA bound to tetracycline
Experimental method
X-RAY DIFFRACTION
Resolution
3 Å

Loop

Sequence
GUGAAAAGC
Length
9 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
Detailed Annotation
T-loop with 2 stacked bulged bases
Broad Annotation
T-loop
Motif group
HL_43993.1
Basepair signature
cWW-tWH-F-F-F-F-F
Number of instances in this motif group
141

Unit IDs

5J7L|1|DA|G|1281
5J7L|1|DA|U|1282
5J7L|1|DA|G|1283
5J7L|1|DA|A|1284
5J7L|1|DA|A|1285
5J7L|1|DA|A|1286
5J7L|1|DA|A|1287
5J7L|1|DA|G|1288
5J7L|1|DA|C|1289

Current chains

Chain DA
23S rRNA

Nearby chains

Chain D1
50S ribosomal protein L32
Chain DO
50S ribosomal protein L17
Chain DT
50S ribosomal protein L22

Coloring options:

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