HL_5J88_012

3D structure

PDB id

5J88 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the E coli 70S ribosome with the U1060A mutation in 16S rRNA

Experimental method

X-RAY DIFFRACTION

Resolution

3.32 Å

Loop

Sequence

GUUAAUACC

Length

9 nucleotides

Bulged bases

5J88|1|AA|U|467

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5J88_012 not in the Motif Atlas

Homologous match to HL_5J7L_012

Geometric discrepancy: 0.0528

The information below is about HL_5J7L_012

Detailed Annotation

GNRA wlth extra near cWW

Broad Annotation

GNRA wlth extra near cWW

Motif group

HL_81538.2

Basepair signature

cWW-tSH-F-F-F-F

Number of instances in this motif group

16

Unit IDs

5J88|1|AA|G|462
5J88|1|AA|U|463
5J88|1|AA|U|464
5J88|1|AA|A|465
5J88|1|AA|A|466
5J88|1|AA|U|467
5J88|1|AA|A|468
5J88|1|AA|C|469
5J88|1|AA|C|470

Current chains

Chain AA

16S rRNA

Nearby chains