HL_5J88_018

3D structure

PDB id

5J88 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the E coli 70S ribosome with the U1060A mutation in 16S rRNA

Experimental method

X-RAY DIFFRACTION

Resolution

3.32 Å

Loop

Sequence

CCUUGAG

Length

7 nucleotides

Bulged bases

5J88|1|AA|G|844

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5J88_018 not in the Motif Atlas

Homologous match to HL_5J7L_018

Geometric discrepancy: 0.1141

The information below is about HL_5J7L_018

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_37344.1

Basepair signature

cWW-F-F

Number of instances in this motif group

2

Unit IDs

5J88|1|AA|C|840
5J88|1|AA|C|841
5J88|1|AA|U|842
5J88|1|AA|U|843
5J88|1|AA|G|844
5J88|1|AA|A|845
5J88|1|AA|G|846

Current chains

Chain AA

16S rRNA

Nearby chains

Chain AB

30S ribosomal protein S2

Chain AR

30S ribosomal protein S18

Chain BB

30S ribosomal protein S2