HL_5J88_036

3D structure

PDB id

5J88 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the E coli 70S ribosome with the U1060A mutation in 16S rRNA

Experimental method

X-RAY DIFFRACTION

Resolution

3.32 Å

Loop

Sequence

CUUCGG

Length

6 nucleotides

Bulged bases

5J88|1|BA|U|209

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5J88_036 not in the Motif Atlas

Geometric match to HL_5J7L_005

Geometric discrepancy: 0.1012

The information below is about HL_5J7L_005

Detailed Annotation

UNCG

Broad Annotation

No text annotation

Motif group

HL_34617.5

Basepair signature

cWW-tSW-F

Number of instances in this motif group

57

Unit IDs

5J88|1|BA|C|207
5J88|1|BA|U|208
5J88|1|BA|U|209
5J88|1|BA|C|210
5J88|1|BA|G|211
5J88|1|BA|G|212

Current chains

Chain BA

16S rRNA

Nearby chains