HL_5J88_065

3D structure

PDB id

5J88 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the E coli 70S ribosome with the U1060A mutation in 16S rRNA

Experimental method

X-RAY DIFFRACTION

Resolution

3.32 Å

Loop

Sequence

GGAAAC

Length

6 nucleotides

Bulged bases

5J88|1|CA|A|125

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5J88_065 not in the Motif Atlas

Homologous match to HL_4WF9_003

Geometric discrepancy: 0.0875

The information below is about HL_4WF9_003

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_75660.7

Basepair signature

cWW-F

Number of instances in this motif group

22

Unit IDs

5J88|1|CA|G|123
5J88|1|CA|G|124
5J88|1|CA|A|125
5J88|1|CA|A|126
5J88|1|CA|A|127
5J88|1|CA|C|128

Current chains

Chain CA

23S rRNA

Nearby chains

Chain C3

50S ribosomal protein L34

Chain CU

50S ribosomal protein L23