HL_5J88_088

3D structure

PDB id

5J88 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the E coli 70S ribosome with the U1060A mutation in 16S rRNA

Experimental method

X-RAY DIFFRACTION

Resolution

3.32 Å

Loop

Sequence

G(PSU)GCUAACGU

Length

10 nucleotides

Bulged bases

5J88|1|CA|U|958, 5J88|1|CA|C|961

QA status

Modified nucleotides: PSU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5J88_088 not in the Motif Atlas

Homologous match to HL_5J7L_159

Geometric discrepancy: 0.1047

The information below is about HL_5J7L_159

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5J88|1|CA|G|954
5J88|1|CA|PSU|955
5J88|1|CA|G|956
5J88|1|CA|C|957
5J88|1|CA|U|958
5J88|1|CA|A|959
5J88|1|CA|A|960
5J88|1|CA|C|961
5J88|1|CA|G|962
5J88|1|CA|U|963

Current chains

Chain CA

23S rRNA

Nearby chains

Chain CB

5S ribosomal RNA; 5S rRNA

Chain CN

50S ribosomal protein L16