HL_5J88_098

3D structure

PDB id

5J88 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the E coli 70S ribosome with the U1060A mutation in 16S rRNA

Experimental method

X-RAY DIFFRACTION

Resolution

3.32 Å

Loop

Sequence

CGACGGUUG

Length

9 nucleotides

Bulged bases

5J88|1|CA|A|1453, 5J88|1|CA|C|1454

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5J88_098 not in the Motif Atlas

Geometric match to HL_7A0S_017

Geometric discrepancy: 0.1527

The information below is about HL_7A0S_017

Detailed Annotation

Mini UNCG with extended bulge

Broad Annotation

Mini UNCG with extended bulge

Motif group

HL_90436.2

Basepair signature

cWW-F

Number of instances in this motif group

46

Unit IDs

5J88|1|CA|C|1451
5J88|1|CA|G|1452
5J88|1|CA|A|1453
5J88|1|CA|C|1454
5J88|1|CA|G|1455
5J88|1|CA|G|1456
5J88|1|CA|U|1457
5J88|1|CA|U|1458
5J88|1|CA|G|1459

Current chains

Chain CA

23S rRNA

Nearby chains

Chain CO

50S ribosomal protein L17