HL_5J88_112

3D structure

PDB id

5J88 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the E coli 70S ribosome with the U1060A mutation in 16S rRNA

Experimental method

X-RAY DIFFRACTION

Resolution

3.32 Å

Loop

Sequence

UGUG(6MZ)AGAUGCA

Length

12 nucleotides

Bulged bases

5J88|1|CA|A|2031, 5J88|1|CA|G|2032

QA status

Modified nucleotides: 6MZ

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5J88|1|CA|U|2026
5J88|1|CA|G|2027
5J88|1|CA|U|2028
5J88|1|CA|G|2029
5J88|1|CA|6MZ|2030
5J88|1|CA|A|2031
5J88|1|CA|G|2032
5J88|1|CA|A|2033
5J88|1|CA|U|2034
5J88|1|CA|G|2035
5J88|1|CA|C|2036
5J88|1|CA|A|2037

Current chains

Chain CA

23S rRNA

Nearby chains

Chain C1

50S ribosomal protein L32

Chain CD

50S ribosomal protein L3

Chain CK

50S ribosomal protein L13

Chain CS

50S ribosomal protein L21