HL_5J88_115

3D structure

PDB id

5J88 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the E coli 70S ribosome with the U1060A mutation in 16S rRNA

Experimental method

X-RAY DIFFRACTION

Resolution

3.32 Å

Loop

Sequence

CUG(OMG)GGCGG

Length

9 nucleotides

Bulged bases

5J88|1|CA|G|2250

QA status

Modified nucleotides: OMG

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5J88_115 not in the Motif Atlas

Homologous match to HL_5J7L_186

Geometric discrepancy: 0.0936

The information below is about HL_5J7L_186

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_85367.2

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

11

Unit IDs

5J88|1|CA|C|2248
5J88|1|CA|U|2249
5J88|1|CA|G|2250
5J88|1|CA|OMG|2251
5J88|1|CA|G|2252
5J88|1|CA|G|2253
5J88|1|CA|C|2254
5J88|1|CA|G|2255
5J88|1|CA|G|2256

Current chains

Chain CA

23S rRNA

Nearby chains

Chain CN

50S ribosomal protein L16

Chain CX

50S ribosomal protein L27