HL_5J88_139

3D structure

PDB id

5J88 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the E coli 70S ribosome with the U1060A mutation in 16S rRNA

Experimental method

X-RAY DIFFRACTION

Resolution

3.32 Å

Loop

Sequence

GAAACAUC

Length

8 nucleotides

Bulged bases

5J88|1|DA|A|196

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5J88_139 not in the Motif Atlas

Geometric match to HL_5J7L_139

Geometric discrepancy: 0.0661

The information below is about HL_5J7L_139

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_30068.2

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

15

Unit IDs

5J88|1|DA|G|194
5J88|1|DA|A|195
5J88|1|DA|A|196
5J88|1|DA|A|197
5J88|1|DA|C|198
5J88|1|DA|A|199
5J88|1|DA|U|200
5J88|1|DA|C|201

Current chains

Chain DA

23S rRNA

Nearby chains

Chain DM

50S ribosomal protein L15

Chain DY

50S ribosomal protein L28