HL_5J88_146

3D structure

PDB id

5J88 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the E coli 70S ribosome with the U1060A mutation in 16S rRNA

Experimental method

X-RAY DIFFRACTION

Resolution

3.32 Å

Loop

Sequence

GGACCAUC

Length

8 nucleotides

Bulged bases

5J88|1|DA|G|411

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5J88_146 not in the Motif Atlas

Homologous match to HL_5J7L_146

Geometric discrepancy: 0.0765

The information below is about HL_5J7L_146

Detailed Annotation

Pseudoknot geometry

Broad Annotation

No text annotation

Motif group

HL_30680.3

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

15

Unit IDs

5J88|1|DA|G|410
5J88|1|DA|G|411
5J88|1|DA|A|412
5J88|1|DA|C|413
5J88|1|DA|C|414
5J88|1|DA|A|415
5J88|1|DA|U|416
5J88|1|DA|C|417

Current chains

Chain DA

23S rRNA

Nearby chains