HL_5J88_150
3D structure
- PDB id
- 5J88 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the E coli 70S ribosome with the U1060A mutation in 16S rRNA
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.32 Å
Loop
- Sequence
- UUUUGUAUAA
- Length
- 10 nucleotides
- Bulged bases
- 5J88|1|DA|A|574
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_5J88_150 not in the Motif Atlas
- Geometric match to HL_5J7L_150
- Geometric discrepancy: 0.0577
- The information below is about HL_5J7L_150
- Detailed Annotation
- T-loop with 2 stacked bulged bases
- Broad Annotation
- T-loop
- Motif group
- HL_28252.9
- Basepair signature
- cWW-tWH-F-F-F-F-F
- Number of instances in this motif group
- 141
Unit IDs
5J88|1|DA|U|566
5J88|1|DA|U|567
5J88|1|DA|U|568
5J88|1|DA|U|569
5J88|1|DA|G|570
5J88|1|DA|U|571
5J88|1|DA|A|572
5J88|1|DA|U|573
5J88|1|DA|A|574
5J88|1|DA|A|575
Current chains
- Chain DA
- 23S rRNA
Nearby chains
- Chain D1
- 50S ribosomal protein L32
- Chain DD
- 50S ribosomal protein L3
- Chain DM
- 50S ribosomal protein L15
- Chain DR
- 50S ribosomal protein L20
- Chain DS
- 50S ribosomal protein L21
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