HL_5J88_183
3D structure
- PDB id
- 5J88 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the E coli 70S ribosome with the U1060A mutation in 16S rRNA
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.32 Å
Loop
- Sequence
- GUG(6MZ)AGAUGC
- Length
- 10 nucleotides
- Bulged bases
- 5J88|1|DA|A|2031, 5J88|1|DA|G|2032
- QA status
- Modified nucleotides: 6MZ
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_5J88_183 not in the Motif Atlas
- Homologous match to HL_5J7L_183
- Geometric discrepancy: 0.0581
- The information below is about HL_5J7L_183
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_61996.3
- Basepair signature
- cWW-tWH-F-F-F
- Number of instances in this motif group
- 7
Unit IDs
5J88|1|DA|G|2027
5J88|1|DA|U|2028
5J88|1|DA|G|2029
5J88|1|DA|6MZ|2030
5J88|1|DA|A|2031
5J88|1|DA|G|2032
5J88|1|DA|A|2033
5J88|1|DA|U|2034
5J88|1|DA|G|2035
5J88|1|DA|C|2036
Current chains
- Chain DA
- 23S rRNA
Nearby chains
- Chain D1
- 50S ribosomal protein L32
- Chain DD
- 50S ribosomal protein L3
- Chain DR
- 50S ribosomal protein L20
- Chain DS
- 50S ribosomal protein L21
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