HL_5J88_211

3D structure

PDB id

5J88 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the E coli 70S ribosome with the U1060A mutation in 16S rRNA

Experimental method

X-RAY DIFFRACTION

Resolution

3.32 Å

Loop

Sequence

UUCUGAAUGGAAGGG

Length

15 nucleotides

Bulged bases

5J88|1|CA|U|2402, 5J88|1|CA|A|2406

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5J88|1|CA|U|2401
5J88|1|CA|U|2402
5J88|1|CA|C|2403
5J88|1|CA|U|2404
5J88|1|CA|G|2405
5J88|1|CA|A|2406
5J88|1|CA|A|2407
5J88|1|CA|U|2408
5J88|1|CA|G|2409
5J88|1|CA|G|2410
5J88|1|CA|A|2411
5J88|1|CA|A|2412
5J88|1|CA|G|2413
5J88|1|CA|G|2414
5J88|1|CA|G|2415

Current chains

Chain CA

23S rRNA

Nearby chains

Chain C2

50S ribosomal protein L33

Chain C4

50S ribosomal protein L35

Chain CM

50S ribosomal protein L15