HL_5J8A_013

3D structure

PDB id

5J8A (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the E coli 70S ribosome with the U1052G mutation in 16S rRNA bound to tigecycline

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

GCAGCC(7MG)C

Length

8 nucleotides

Bulged bases

None detected

QA status

Modified nucleotides: 7MG

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5J8A_013 not in the Motif Atlas

Geometric match to HL_4V9F_003

Geometric discrepancy: 0.2223

The information below is about HL_4V9F_003

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_75660.6

Basepair signature

cWW-F

Number of instances in this motif group

21

Unit IDs

5J8A|1|AA|G|521
5J8A|1|AA|C|522
5J8A|1|AA|A|523
5J8A|1|AA|G|524
5J8A|1|AA|C|525
5J8A|1|AA|C|526
5J8A|1|AA|7MG|527
5J8A|1|AA|C|528

Current chains

Chain AA

16S rRNA

Nearby chains

Chain AL

30S ribosomal protein S12