HL_5J8A_018

3D structure

PDB id

5J8A (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the E coli 70S ribosome with the U1052G mutation in 16S rRNA bound to tigecycline

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

CCUUGAG

Length

7 nucleotides

Bulged bases

5J8A|1|AA|G|844

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5J8A_018 not in the Motif Atlas

Homologous match to HL_5J7L_018

Geometric discrepancy: 0.0144

The information below is about HL_5J7L_018

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_37344.1

Basepair signature

cWW-F-F

Number of instances in this motif group

2

Unit IDs

5J8A|1|AA|C|840
5J8A|1|AA|C|841
5J8A|1|AA|U|842
5J8A|1|AA|U|843
5J8A|1|AA|G|844
5J8A|1|AA|A|845
5J8A|1|AA|G|846

Current chains

Chain AA

16S rRNA

Nearby chains

Chain AB

30S ribosomal protein S2

Chain AR

30S ribosomal protein S18

Chain BB

30S ribosomal protein S2