HL_5J8A_043

3D structure

PDB id

5J8A (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the E coli 70S ribosome with the U1052G mutation in 16S rRNA bound to tigecycline

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

GUUAAUACC

Length

9 nucleotides

Bulged bases

5J8A|1|BA|U|467

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5J8A_043 not in the Motif Atlas

Homologous match to HL_5J7L_012

Geometric discrepancy: 0.0328

The information below is about HL_5J7L_012

Detailed Annotation

GNRA wlth extra near cWW

Broad Annotation

GNRA wlth extra near cWW

Motif group

HL_81538.2

Basepair signature

cWW-tSH-F-F-F-F

Number of instances in this motif group

16

Unit IDs

5J8A|1|BA|G|462
5J8A|1|BA|U|463
5J8A|1|BA|U|464
5J8A|1|BA|A|465
5J8A|1|BA|A|466
5J8A|1|BA|U|467
5J8A|1|BA|A|468
5J8A|1|BA|C|469
5J8A|1|BA|C|470

Current chains

Chain BA

16S rRNA

Nearby chains