HL_5J8A_060
3D structure
- PDB id
- 5J8A (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the E coli 70S ribosome with the U1052G mutation in 16S rRNA bound to tigecycline
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.1 Å
Loop
- Sequence
- GAUCAGAAUGC
- Length
- 11 nucleotides
- Bulged bases
- 5J8A|1|BA|A|1362, 5J8A|1|BA|U|1364
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_5J8A_060 not in the Motif Atlas
- Homologous match to HL_4LFB_030
- Geometric discrepancy: 0.3155
- The information below is about HL_4LFB_030
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_86432.1
- Basepair signature
- cWW-tWH-tWH-F-F-F
- Number of instances in this motif group
- 5
Unit IDs
5J8A|1|BA|G|1356
5J8A|1|BA|A|1357
5J8A|1|BA|U|1358
5J8A|1|BA|C|1359
5J8A|1|BA|A|1360
5J8A|1|BA|G|1361
5J8A|1|BA|A|1362
5J8A|1|BA|A|1363
5J8A|1|BA|U|1364
5J8A|1|BA|G|1365
5J8A|1|BA|C|1366
Current chains
- Chain BA
- 16S rRNA
Nearby chains
- Chain BC
- 30S ribosomal protein S3
- Chain BI
- 30S ribosomal protein S9
- Chain BJ
- 30S ribosomal protein S10
- Chain BN
- 30S ribosomal protein S14
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