HL_5J8A_112

3D structure

PDB id

5J8A (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the E coli 70S ribosome with the U1052G mutation in 16S rRNA bound to tigecycline

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

GUG(6MZ)AGAUGC

Length

10 nucleotides

Bulged bases

5J8A|1|CA|A|2031, 5J8A|1|CA|G|2032

QA status

Modified nucleotides: 6MZ

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5J8A_112 not in the Motif Atlas

Homologous match to HL_5J7L_183

Geometric discrepancy: 0.0679

The information below is about HL_5J7L_183

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_61996.3

Basepair signature

cWW-tWH-F-F-F

Number of instances in this motif group

7

Unit IDs

5J8A|1|CA|G|2027
5J8A|1|CA|U|2028
5J8A|1|CA|G|2029
5J8A|1|CA|6MZ|2030
5J8A|1|CA|A|2031
5J8A|1|CA|G|2032
5J8A|1|CA|A|2033
5J8A|1|CA|U|2034
5J8A|1|CA|G|2035
5J8A|1|CA|C|2036

Current chains

Chain CA

23S rRNA

Nearby chains

Chain C1

50S ribosomal protein L32

Chain CD

50S ribosomal protein L3

Chain CS

50S ribosomal protein L21