HL_5J8A_117

3D structure

PDB id

5J8A (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the E coli 70S ribosome with the U1052G mutation in 16S rRNA bound to tigecycline

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

GGUCGGACAUC

Length

11 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5J8A_117 not in the Motif Atlas

Homologous match to HL_7RQB_055

Geometric discrepancy: 0.1855

The information below is about HL_7RQB_055

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_11805.3

Basepair signature

cWW-F-F-F-F-F-F-F-F-F

Number of instances in this motif group

3

Unit IDs

5J8A|1|CA|G|2303
5J8A|1|CA|G|2304
5J8A|1|CA|U|2305
5J8A|1|CA|C|2306
5J8A|1|CA|G|2307
5J8A|1|CA|G|2308
5J8A|1|CA|A|2309
5J8A|1|CA|C|2310
5J8A|1|CA|A|2311
5J8A|1|CA|U|2312
5J8A|1|CA|C|2313

Current chains

Chain CA

23S rRNA

Nearby chains

Chain CB

5S ribosomal RNA; 5S rRNA

Chain CF

50S ribosomal protein L5