HL_5J8A_146

3D structure

PDB id

5J8A (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the E coli 70S ribosome with the U1052G mutation in 16S rRNA bound to tigecycline

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

GGACCAUC

Length

8 nucleotides

Bulged bases

5J8A|1|DA|G|411

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5J8A_146 not in the Motif Atlas

Homologous match to HL_5J7L_146

Geometric discrepancy: 0.03

The information below is about HL_5J7L_146

Detailed Annotation

Pseudoknot geometry

Broad Annotation

No text annotation

Motif group

HL_30680.3

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

15

Unit IDs

5J8A|1|DA|G|410
5J8A|1|DA|G|411
5J8A|1|DA|A|412
5J8A|1|DA|C|413
5J8A|1|DA|C|414
5J8A|1|DA|A|415
5J8A|1|DA|U|416
5J8A|1|DA|C|417

Current chains

Chain DA

23S rRNA

Nearby chains

Chain DM

50S ribosomal protein L15