3D structure

PDB id
5J8A (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of the E coli 70S ribosome with the U1052G mutation in 16S rRNA bound to tigecycline
Experimental method
X-RAY DIFFRACTION
Resolution
3.1 Å

Loop

Sequence
UUUUGUAUAA
Length
10 nucleotides
Bulged bases
5J8A|1|DA|A|574
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_5J8A_150 not in the Motif Atlas
Geometric match to HL_5J7L_150
Geometric discrepancy: 0.0253
The information below is about HL_5J7L_150
Detailed Annotation
T-loop with 2 stacked bulged bases
Broad Annotation
T-loop
Motif group
HL_28252.9
Basepair signature
cWW-tWH-F-F-F-F-F
Number of instances in this motif group
141

Unit IDs

5J8A|1|DA|U|566
5J8A|1|DA|U|567
5J8A|1|DA|U|568
5J8A|1|DA|U|569
5J8A|1|DA|G|570
5J8A|1|DA|U|571
5J8A|1|DA|A|572
5J8A|1|DA|U|573
5J8A|1|DA|A|574
5J8A|1|DA|A|575

Current chains

Chain DA
23S rRNA

Nearby chains

Chain D1
50S ribosomal protein L32
Chain DD
50S ribosomal protein L3
Chain DM
50S ribosomal protein L15
Chain DR
50S ribosomal protein L20
Chain DS
50S ribosomal protein L21

Coloring options:


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