HL_5J8A_156

3D structure

PDB id

5J8A (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the E coli 70S ribosome with the U1052G mutation in 16S rRNA bound to tigecycline

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

UGAAAGG

Length

7 nucleotides

Bulged bases

5J8A|1|DA|A|781, 5J8A|1|DA|G|784

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5J8A_156 not in the Motif Atlas

Homologous match to HL_5J7L_156

Geometric discrepancy: 0.0341

The information below is about HL_5J7L_156

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_87954.2

Basepair signature

cWW-tSW-F

Number of instances in this motif group

7

Unit IDs

5J8A|1|DA|U|779
5J8A|1|DA|G|780
5J8A|1|DA|A|781
5J8A|1|DA|A|782
5J8A|1|DA|A|783
5J8A|1|DA|G|784
5J8A|1|DA|G|785

Current chains

Chain DA

23S rRNA

Nearby chains

Chain DC

50S ribosomal protein L2