HL_5J8A_168

3D structure

PDB id

5J8A (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the E coli 70S ribosome with the U1052G mutation in 16S rRNA bound to tigecycline

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

GUUAAUAUUC

Length

10 nucleotides

Bulged bases

5J8A|1|DA|U|1396, 5J8A|1|DA|U|1397

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5J8A_168 not in the Motif Atlas

Homologous match to HL_5J7L_168

Geometric discrepancy: 0.0316

The information below is about HL_5J7L_168

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_81545.2

Basepair signature

cWW-tWH-F-F-F-F

Number of instances in this motif group

7

Unit IDs

5J8A|1|DA|G|1389
5J8A|1|DA|U|1390
5J8A|1|DA|U|1391
5J8A|1|DA|A|1392
5J8A|1|DA|A|1393
5J8A|1|DA|U|1394
5J8A|1|DA|A|1395
5J8A|1|DA|U|1396
5J8A|1|DA|U|1397
5J8A|1|DA|C|1398

Current chains

Chain DA

23S rRNA

Nearby chains

Chain DU

50S ribosomal protein L23