HL_5J91_098

3D structure

PDB id

5J91 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Wild-type 70S E coli ribosome bound to Tigecycline

Experimental method

X-RAY DIFFRACTION

Resolution

2.96 Å

Loop

Sequence

CGACGGUUG

Length

9 nucleotides

Bulged bases

5J91|1|CA|A|1453, 5J91|1|CA|C|1454

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5J91_098 not in the Motif Atlas

Geometric match to HL_4V88_192

Geometric discrepancy: 0.101

The information below is about HL_4V88_192

Detailed Annotation

Mini UNCG

Broad Annotation

No text annotation

Motif group

HL_43793.1

Basepair signature

cWW-F

Number of instances in this motif group

50

Unit IDs

5J91|1|CA|C|1451
5J91|1|CA|G|1452
5J91|1|CA|A|1453
5J91|1|CA|C|1454
5J91|1|CA|G|1455
5J91|1|CA|G|1456
5J91|1|CA|U|1457
5J91|1|CA|U|1458
5J91|1|CA|G|1459

Current chains

Chain CA

23S rRNA

Nearby chains

Chain CO

50S ribosomal protein L17