HL_5JC9_013

3D structure

PDB id

5JC9 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Escherichia coli ribosome with the U1052G mutation in the 16S rRNA

Experimental method

X-RAY DIFFRACTION

Resolution

3.03 Å

Loop

Sequence

GCAGCC(G7M)C

Length

8 nucleotides

Bulged bases

None detected

QA status

Modified nucleotides: G7M

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5JC9_013 not in the Motif Atlas

Geometric match to HL_4V9F_003

Geometric discrepancy: 0.2277

The information below is about HL_4V9F_003

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_75660.5

Basepair signature

cWW-F

Number of instances in this motif group

19

Unit IDs

5JC9|1|AA|G|521
5JC9|1|AA|C|522
5JC9|1|AA|A|523
5JC9|1|AA|G|524
5JC9|1|AA|C|525
5JC9|1|AA|C|526
5JC9|1|AA|G7M|527
5JC9|1|AA|C|528

Current chains

Chain AA

16S rRNA

Nearby chains

Chain AL

30S ribosomal protein S12