HL_5JC9_018

3D structure

PDB id

5JC9 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Escherichia coli ribosome with the U1052G mutation in the 16S rRNA

Experimental method

X-RAY DIFFRACTION

Resolution

3.03 Å

Loop

Sequence

CCUUGAG

Length

7 nucleotides

Bulged bases

5JC9|1|AA|G|844

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5JC9_018 not in the Motif Atlas

Homologous match to HL_5J7L_018

Geometric discrepancy: 0.103

The information below is about HL_5J7L_018

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_37344.1

Basepair signature

cWW-F-F

Number of instances in this motif group

2

Unit IDs

5JC9|1|AA|C|840
5JC9|1|AA|C|841
5JC9|1|AA|U|842
5JC9|1|AA|U|843
5JC9|1|AA|G|844
5JC9|1|AA|A|845
5JC9|1|AA|G|846

Current chains

Chain AA

16S rRNA

Nearby chains

Chain AB

30S ribosomal protein S2

Chain AR

30S ribosomal protein S18

Chain BB

30S ribosomal protein S2