HL_5JC9_031

3D structure

PDB id

5JC9 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Escherichia coli ribosome with the U1052G mutation in the 16S rRNA

Experimental method

X-RAY DIFFRACTION

Resolution

3.03 Å

Loop

Sequence

G(2MG)G(MA6)(MA6)C

Length

6 nucleotides

Bulged bases

5JC9|1|AA|G|1517

QA status

Modified nucleotides: 2MG, MA6

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5JC9_031 not in the Motif Atlas

Homologous match to HL_6CZR_103

Geometric discrepancy: 0.0814

The information below is about HL_6CZR_103

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.6

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

360

Unit IDs

5JC9|1|AA|G|1515
5JC9|1|AA|2MG|1516
5JC9|1|AA|G|1517
5JC9|1|AA|MA6|1518
5JC9|1|AA|MA6|1519
5JC9|1|AA|C|1520

Current chains

Chain AA

16S rRNA

Nearby chains

Chain DA

Large subunit ribosomal RNA; LSU rRNA