HL_5JC9_040

3D structure

PDB id

5JC9 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Escherichia coli ribosome with the U1052G mutation in the 16S rRNA

Experimental method

X-RAY DIFFRACTION

Resolution

3.03 Å

Loop

Sequence

CUACGG

Length

6 nucleotides

Bulged bases

5JC9|1|BA|A|344

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5JC9_040 not in the Motif Atlas

Homologous match to HL_5J7L_009

Geometric discrepancy: 0.0521

The information below is about HL_5J7L_009

Detailed Annotation

UNCG

Broad Annotation

No text annotation

Motif group

HL_34617.5

Basepair signature

cWW-tSW-F

Number of instances in this motif group

57

Unit IDs

5JC9|1|BA|C|342
5JC9|1|BA|U|343
5JC9|1|BA|A|344
5JC9|1|BA|C|345
5JC9|1|BA|G|346
5JC9|1|BA|G|347

Current chains

Chain BA

16S rRNA

Nearby chains

Chain CL

50S ribosomal protein L14

Chain CQ

50S ribosomal protein L19