3D structure

PDB id
5JC9 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of the Escherichia coli ribosome with the U1052G mutation in the 16S rRNA
Experimental method
X-RAY DIFFRACTION
Resolution
3.03 Å

Loop

Sequence
CCUUGAG
Length
7 nucleotides
Bulged bases
5JC9|1|BA|U|843
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_5JC9_049 not in the Motif Atlas
Geometric match to HL_8C3A_221
Geometric discrepancy: 0.2609
The information below is about HL_8C3A_221
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
HL_48417.3
Basepair signature
cWW-F-F
Number of instances in this motif group
23

Unit IDs

5JC9|1|BA|C|840
5JC9|1|BA|C|841
5JC9|1|BA|U|842
5JC9|1|BA|U|843
5JC9|1|BA|G|844
5JC9|1|BA|A|845
5JC9|1|BA|G|846

Current chains

Chain BA
16S rRNA

Nearby chains

Chain BR
30S ribosomal protein S18

Coloring options:


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