HL_5JC9_075

3D structure

PDB id

5JC9 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Escherichia coli ribosome with the U1052G mutation in the 16S rRNA

Experimental method

X-RAY DIFFRACTION

Resolution

3.03 Å

Loop

Sequence

GGACCAUC

Length

8 nucleotides

Bulged bases

5JC9|1|CA|G|411

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5JC9_075 not in the Motif Atlas

Homologous match to HL_5J7L_146

Geometric discrepancy: 0.0809

The information below is about HL_5J7L_146

Detailed Annotation

Pseudoknot geometry

Broad Annotation

No text annotation

Motif group

HL_30680.3

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

15

Unit IDs

5JC9|1|CA|G|410
5JC9|1|CA|G|411
5JC9|1|CA|A|412
5JC9|1|CA|C|413
5JC9|1|CA|C|414
5JC9|1|CA|A|415
5JC9|1|CA|U|416
5JC9|1|CA|C|417

Current chains

Chain CA

23S rRNA

Nearby chains