HL_5JC9_097

3D structure

PDB id

5JC9 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Escherichia coli ribosome with the U1052G mutation in the 16S rRNA

Experimental method

X-RAY DIFFRACTION

Resolution

3.03 Å

Loop

Sequence

GUUAAUAUUC

Length

10 nucleotides

Bulged bases

5JC9|1|CA|U|1396, 5JC9|1|CA|U|1397

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5JC9_097 not in the Motif Atlas

Homologous match to HL_5J7L_168

Geometric discrepancy: 0.066

The information below is about HL_5J7L_168

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_81545.2

Basepair signature

cWW-tWH-F-F-F-F

Number of instances in this motif group

7

Unit IDs

5JC9|1|CA|G|1389
5JC9|1|CA|U|1390
5JC9|1|CA|U|1391
5JC9|1|CA|A|1392
5JC9|1|CA|A|1393
5JC9|1|CA|U|1394
5JC9|1|CA|A|1395
5JC9|1|CA|U|1396
5JC9|1|CA|U|1397
5JC9|1|CA|C|1398

Current chains

Chain CA

23S rRNA

Nearby chains

Chain CU

50S ribosomal protein L23