HL_5JC9_102

3D structure

PDB id

5JC9 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Escherichia coli ribosome with the U1052G mutation in the 16S rRNA

Experimental method

X-RAY DIFFRACTION

Resolution

3.03 Å

Loop

Sequence

CGACAC(6MZ)G

Length

8 nucleotides

Bulged bases

5JC9|1|CA|A|1614, 5JC9|1|CA|A|1616

QA status

Modified nucleotides: 6MZ

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5JC9_102 not in the Motif Atlas

Homologous match to HL_5J7L_173

Geometric discrepancy: 0.0531

The information below is about HL_5J7L_173

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_89567.2

Basepair signature

cWW-F-F-F

Number of instances in this motif group

8

Unit IDs

5JC9|1|CA|C|1612
5JC9|1|CA|G|1613
5JC9|1|CA|A|1614
5JC9|1|CA|C|1615
5JC9|1|CA|A|1616
5JC9|1|CA|C|1617
5JC9|1|CA|6MZ|1618
5JC9|1|CA|G|1619

Current chains

Chain CA

23S rRNA

Nearby chains

Chain C3

50S ribosomal protein L34

Chain CT

50S ribosomal protein L22