HL_5JC9_117

3D structure

PDB id

5JC9 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Escherichia coli ribosome with the U1052G mutation in the 16S rRNA

Experimental method

X-RAY DIFFRACTION

Resolution

3.03 Å

Loop

Sequence

GGUCGGACAUC

Length

11 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5JC9_117 not in the Motif Atlas

Homologous match to HL_7RQB_055

Geometric discrepancy: 0.1592

The information below is about HL_7RQB_055

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_11805.3

Basepair signature

cWW-F-F-F-F-F-F-F-F-F

Number of instances in this motif group

3

Unit IDs

5JC9|1|CA|G|2303
5JC9|1|CA|G|2304
5JC9|1|CA|U|2305
5JC9|1|CA|C|2306
5JC9|1|CA|G|2307
5JC9|1|CA|G|2308
5JC9|1|CA|A|2309
5JC9|1|CA|C|2310
5JC9|1|CA|A|2311
5JC9|1|CA|U|2312
5JC9|1|CA|C|2313

Current chains

Chain CA

23S rRNA

Nearby chains

Chain CB

5S ribosomal RNA; 5S rRNA

Chain CF

50S ribosomal protein L5