3D structure

PDB id
5JC9 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of the Escherichia coli ribosome with the U1052G mutation in the 16S rRNA
Experimental method
X-RAY DIFFRACTION
Resolution
3.03 Å

Loop

Sequence
GAAACAUC
Length
8 nucleotides
Bulged bases
5JC9|1|DA|A|196
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_5JC9_139 not in the Motif Atlas
Homologous match to HL_5J7L_139
Geometric discrepancy: 0.0446
The information below is about HL_5J7L_139
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
HL_30068.2
Basepair signature
cWW-F-F-F-F
Number of instances in this motif group
15

Unit IDs

5JC9|1|DA|G|194
5JC9|1|DA|A|195
5JC9|1|DA|A|196
5JC9|1|DA|A|197
5JC9|1|DA|C|198
5JC9|1|DA|A|199
5JC9|1|DA|U|200
5JC9|1|DA|C|201

Current chains

Chain DA
23S rRNA

Nearby chains

Chain DM
50S ribosomal protein L15
Chain DY
50S ribosomal protein L28

Coloring options:


Copyright 2025 BGSU RNA group. Page generated in 0.513 s