HL_5JC9_170

3D structure

PDB id

5JC9 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Escherichia coli ribosome with the U1052G mutation in the 16S rRNA

Experimental method

X-RAY DIFFRACTION

Resolution

3.03 Å

Loop

Sequence

GCAAAUC

Length

7 nucleotides

Bulged bases

5JC9|1|DA|C|1493, 5JC9|1|DA|U|1497

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5JC9_170 not in the Motif Atlas

Homologous match to HL_5J7L_170

Geometric discrepancy: 0.0402

The information below is about HL_5J7L_170

Detailed Annotation

Pseudoknot geometry with 3' bulge

Broad Annotation

No text annotation

Motif group

HL_57176.2

Basepair signature

cWW-F-F-F

Number of instances in this motif group

14

Unit IDs

5JC9|1|DA|G|1492
5JC9|1|DA|C|1493
5JC9|1|DA|A|1494
5JC9|1|DA|A|1495
5JC9|1|DA|A|1496
5JC9|1|DA|U|1497
5JC9|1|DA|C|1498

Current chains

Chain DA

23S rRNA

Nearby chains

Chain DC

50S ribosomal protein L2