HL_5JC9_183

3D structure

PDB id

5JC9 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Escherichia coli ribosome with the U1052G mutation in the 16S rRNA

Experimental method

X-RAY DIFFRACTION

Resolution

3.03 Å

Loop

Sequence

GUG(6MZ)AGAUGC

Length

10 nucleotides

Bulged bases

5JC9|1|DA|A|2031, 5JC9|1|DA|G|2032

QA status

Modified nucleotides: 6MZ

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5JC9_183 not in the Motif Atlas

Homologous match to HL_5J7L_183

Geometric discrepancy: 0.0293

The information below is about HL_5J7L_183

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_61996.3

Basepair signature

cWW-tWH-F-F-F

Number of instances in this motif group

7

Unit IDs

5JC9|1|DA|G|2027
5JC9|1|DA|U|2028
5JC9|1|DA|G|2029
5JC9|1|DA|6MZ|2030
5JC9|1|DA|A|2031
5JC9|1|DA|G|2032
5JC9|1|DA|A|2033
5JC9|1|DA|U|2034
5JC9|1|DA|G|2035
5JC9|1|DA|C|2036

Current chains

Chain DA

23S rRNA

Nearby chains

Chain D1

50S ribosomal protein L32

Chain DD

50S ribosomal protein L3

Chain DS

50S ribosomal protein L21