HL_5JC9_186

3D structure

PDB id

5JC9 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Escherichia coli ribosome with the U1052G mutation in the 16S rRNA

Experimental method

X-RAY DIFFRACTION

Resolution

3.03 Å

Loop

Sequence

CUG(OMG)GGCGG

Length

9 nucleotides

Bulged bases

5JC9|1|DA|G|2250

QA status

Modified nucleotides: OMG

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5JC9_186 not in the Motif Atlas

Homologous match to HL_5J7L_186

Geometric discrepancy: 0.0311

The information below is about HL_5J7L_186

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_85367.2

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

11

Unit IDs

5JC9|1|DA|C|2248
5JC9|1|DA|U|2249
5JC9|1|DA|G|2250
5JC9|1|DA|OMG|2251
5JC9|1|DA|G|2252
5JC9|1|DA|G|2253
5JC9|1|DA|C|2254
5JC9|1|DA|G|2255
5JC9|1|DA|G|2256

Current chains

Chain DA

23S rRNA

Nearby chains

Chain DN

50S ribosomal protein L16

Chain DX

50S ribosomal protein L27