HL_5JC9_218

3D structure

PDB id

5JC9 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Escherichia coli ribosome with the U1052G mutation in the 16S rRNA

Experimental method

X-RAY DIFFRACTION

Resolution

3.03 Å

Loop

Sequence

CCUCGCG

Length

7 nucleotides

Bulged bases

5JC9|1|DA|U|1729, 5JC9|1|DA|C|1732

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5JC9_218 not in the Motif Atlas

Homologous match to HL_5J7L_214

Geometric discrepancy: 0.1201

The information below is about HL_5J7L_214

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_08100.1

Basepair signature

cWW-F-F-F

Number of instances in this motif group

4

Unit IDs

5JC9|1|DA|C|1727
5JC9|1|DA|C|1728
5JC9|1|DA|U|1729
5JC9|1|DA|C|1730
5JC9|1|DA|G|1731
5JC9|1|DA|C|1732
5JC9|1|DA|G|1733

Current chains

Chain DA

23S rRNA

Nearby chains