HL_5JPQ_008

3D structure

PDB id

5JPQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the 90S pre-ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

7.3 Å

Loop

Sequence

CCUGAGAAACGG

Length

12 nucleotides

Bulged bases

5JPQ|1|2|A|400

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5JPQ|1|2|C|393
5JPQ|1|2|C|394
5JPQ|1|2|U|395
5JPQ|1|2|G|396
5JPQ|1|2|A|397
5JPQ|1|2|G|398
5JPQ|1|2|A|399
5JPQ|1|2|A|400
5JPQ|1|2|A|401
5JPQ|1|2|C|402
5JPQ|1|2|G|403
5JPQ|1|2|G|404

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain n

WD40 domain proteins

Chain p

eS4

Chain r

eS6

Chain t

eS8