HL_5JPQ_009

3D structure

PDB id

5JPQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the 90S pre-ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

7.3 Å

Loop

Sequence

CCAAGG

Length

6 nucleotides

Bulged bases

5JPQ|1|2|A|416

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5JPQ_009 not in the Motif Atlas

Homologous match to HL_4V88_196

Geometric discrepancy: 0.4485

The information below is about HL_4V88_196

Detailed Annotation

UNCG

Broad Annotation

No text annotation

Motif group

HL_34617.1

Basepair signature

cWW-tSW-F

Number of instances in this motif group

57

Unit IDs

5JPQ|1|2|C|414
5JPQ|1|2|C|415
5JPQ|1|2|A|416
5JPQ|1|2|A|417
5JPQ|1|2|G|418
5JPQ|1|2|G|419

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain i

Kre33

Chain r

eS6